(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: EDA
File name: alatis_output_compound.sdf
|
Formula: C12H14N5O6P1 Compound mass: 355.2427 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.38
List of identified carbohydrate fragments:
-
C5H8N1O3
Fragment probability: 1.00
Fragment mass: 130.1216
Fragment main chain atoms: [3, 7, 8, 23, 9]
Fragment all atoms: [3, 27, 28, 7, 33, 18, 36, 8, 34, 4, 29, 30, 22, 23, 9, 35, 17]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| EDA | 5DGB 2DPI 5DG8 5DG7 1EWN 3RZK 5HT2 150D 3O1P 5DGA 2DPJ 5DG9 1F4R |
| PRN | 1CL8 1U1L 1U1N |
| PR5 | |
| P5P | 2DD1 5AJ3 2DD3 4V19 1XV0 1MV6 2DD2 5AJ4 5APN 4G6P 5APO 1MV1 2B3J 1MV2 4G6S 1RBN |
| EDC | 3UBY 1B5K 1B6X 3QI5 1B6Y 1N5C 1B60 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.