• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: E6D
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.84
• Compound probability: 0.46

List of identified carbohydrate fragments:

• C₅H₈O₂
  Fragment probability: 0.60
  Fragment mass: 71.0975
  Fragment main chain atoms: [6, 24, 15]
  Fragment all atoms: [6, 40, 41, 1, 25, 26, 27, 24, 15, 10, 48, 49, 14, 53, 21]
  

• C₆H₉N₁O₄
  Fragment probability: 0.65
  Fragment mass: 145.1329
  Fragment main chain atoms: [6, 24, 15, 10, 14, 17]
  Fragment all atoms: [6, 40, 41, 1, 25, 26, 27, 24, 15, 21, 10, 48, 49, 14, 53, 20, 56, 17, 23, 19]
  

• C₄H₄N₁O₄
  Fragment probability: 0.84
  Fragment mass: 116.072
  Fragment main chain atoms: [15, 10, 14, 17]
  Fragment all atoms: [15, 21, 24, 10, 48, 49, 14, 53, 20, 56, 17, 23, 19]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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