(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: DZM
File name: alatis_output_compound.sdf
|
Formula: C12H17N4O6P1 Compound mass: 344.25970000000007 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.39
List of identified carbohydrate fragments:
-
C5H8N1O3
Fragment probability: 1.00
Fragment mass: 130.1216
Fragment main chain atoms: [2, 7, 8, 22, 9]
Fragment all atoms: [2, 27, 28, 7, 33, 17, 38, 8, 34, 4, 30, 31, 21, 22, 9, 35, 16]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| DZM | 5CL4 5CL3 5CL6 3JX7 5CL5 5CLC 5CL7 5CLB |
| 4DU | 4DU4 4DU3 5OT2 |
| 1DP | 3I2S 3I2U 3I2Q 3I2R |
| EDA | 5DGB 2DPI 5DG8 5DG7 1EWN 3RZK 5HT2 150D 3O1P 5DGA 2DPJ 5DG9 1F4R |
| 1AP | 6B1Q 3C29 211D 4HDV 1S1K 1D76 1VTY 210D 1ZAY |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.