(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: DXN
File name: alatis_output_compound.sdf
|
Formula: C6H13O6P1 Compound mass: 212.1371000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.69
List of identified carbohydrate fragments:
-
C6H11O3
Fragment probability: 1.00
Fragment mass: 131.14930000000004
Fragment main chain atoms: [4, 6, 2, 5, 1]
Fragment all atoms: [4, 20, 3, 18, 19, 12, 6, 22, 8, 24, 2, 16, 17, 5, 21, 7, 23, 1, 14, 15]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| DXD | 1XCZ 1XCY |
| DXN | |
| CAK | 2GRU |
| JAZ | 5FOO |
| S6P | 2GC1 4MSU 4PX3 4OP2 2CXQ 4OHK 4OHM 4MRO 1XTB 4OHO 3CTL 4KXU 4OP1 4OLH 4PX5 4LY9 4PX2 4OP3 4OHP 4PXS 4MQU |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.