Logo Cheminformatics Tool for Probabilistic Identification of Carbohydrates
(CTPIC)
v 1.1 (Spring 2020)

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Process a structure file

Publication files:

Submission ID: DUN
File name: alatis_output_compound.sdf

Formula: C9H15N3O10P2
Compound mass: 387.17650000000003
Compound with ALATIS labels (download):

Download outputs in JSON format here.


Probabilities of the best carbohydrate fragment:

  • Fragment probability: 1.00
  • Compound probability: 0.38


List of identified carbohydrate fragments:

  • C5H8N1O3
    Fragment probability: 1.00
    Fragment mass: 130.1216
    Fragment main chain atoms: [3, 5, 6, 22, 8]
    Fragment all atoms: [3, 27, 28, 5, 31, 13, 36, 6, 32, 4, 29, 30, 21, 22, 8, 33, 12]



Most similar ligands:

Ligand Expo IDPDB protein complex ID
DUN4DK4
2CJE
1W2Y
4DKB
DUP5J2D
3SI6
3UIQ
3TPN
5J2I
4WRK
5J2A
2PFN
1SJN
5HVA
5F9K
2XCE
4M9J
2FMQ
5J2K
2FMS
2PY4
3ZF1
5J2C
2CIC
3TQ3
2OKE
3ZF0
3TPY
2XY3
6BTF
4JWN
3EHW
4OOP
4GV8
3TQ4
5HWU
5NYZ
5HYL
3ZF5
5NZ2
2D4N
5J2J
5MYD
3H6D
5EDD
3SCX
3ZF4
3P48
2HQU
3SQ1
6HDE
2PFO
4GCY
3SQ0
4YD1
5MIL
5CCT
2BT1
1SIX
3ZEZ
5IIN
5IIM
5J2B
3S9H
4JWM
5J29
3TPS
5J2E
2HXD
4R66
3I93
2YAY
1RNJ
3HZA
5J2H
5ECT
3TP1
3C2K
3SJJ
3LOJ
5GNQ
6AKH
5J2F
4M04
1RN8
5J2G
3TPW
4KHQ
4R65
UPR
DU
UMP3TRN
3N0C
2AAZ
1JUJ
3DL6
3CL9
4AO5
4GT9
2YFC
3AH5
4FOX
6A2K
4FQS
1BPJ
5MQJ
4EIL
5HX1
1SNF
2YAZ
4KYA
4KY4
3K2H
3IHH
5NOO
2G8M
1TSX
1JMG
5X66
3QG2
3G4A
4E5O
6A2N
1TSD
5X5Q
6KPR
6PF5
6AOI
1Z4I
5X67
6QXH
4EB4
1O26
1SEJ
1KCE
6QYA
2BSY
2KCE
4XSD
1AXW
1JMF
2WE1
4ECK
6PF3
1VZB
6N1S
3HJ3
4GTD
1JU6
4G9U
229D
1HVY
1O25
6PF4
2JAR
6OJV
3TRL
5X69
2OIP
2WE2
3DG8
1TVU
3DL5
2A9W
3QJ7
4GTA
6MAO
6OJU
2G89
4H0U
6A2M
1JTQ
2TSR
6KOT
1J3J
1J3I
1NJB
3BZ0
3N3Y
6GKO
6PF6
5T7O
5BY6
5X5D
3INV
5HS3
1TVW
4IQQ
1JTU
5IOT
1J3K
3F4F
1QZF
6N1T
1NZB
5IFY
4ISK
1CI7
1R2Z
1I00
2BBQ
6A2L
5HZZ
3N0B
5CCO
1SEH
4DLC
6AOG
2QCH
3TTA
6A2P
1JMI
5I0M
1JUT
3HB8
3UM5
3G4C
6CDZ
1JMH
1DNA
4DL8
1KZJ
3NRR
5ARK
3QGT
3JSU
2G8D
1LCA
1ZPR
1JG0
1AIQ
4IRR
3BYX
1BQ1
1Q3U
1BID
1RTS
5T0L
4GTB
1TVV
2G8O
1VZA
6KY9
6AOH
1F7K
2TSC
2OL1
4ISW
2G86
1F7N
5IOS
1LCE
1VZE
1KZI
6A2O
1TRG
3TQ3
4GTF
1NCE
1OUQ
3TSL
4DPD
3DGA
1SYN
1F28
3IK1
3TPY
1BP0
5H3A
6KZ6
5H39
1Q3V
2TDM
2G8A
3UM6
6KP7
4LRR
3TQ5
4DQ1
1BP6
2YFD
1TDC
3TS6
5I0J
2WE0
3C06
1THY
1TSV
2VET
1TSY
3ZF6
3BNZ
3IK0
1NJD
3IJZ
3TQ4
3C0A

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Citation:

  • Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

  • The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
  • The NetwrokX library is used in the CTPIC source codes.
  • The Open Babel software package is used in the CTPIC source codes.

Contact:

For any question or concern please contact Hesam Dashti (hdashti@bwh.harvard.edu).