(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: DLG
File name: alatis_output_compound.sdf
|
Formula: C12H24O5 Compound mass: 248.3150000000002 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.65
List of identified carbohydrate fragments:
-
C6H11O5
Fragment probability: 1.00
Fragment mass: 163.14810000000003
Fragment main chain atoms: [10, 7, 9, 11, 17, 12, 15, 36, 41, 14, 35, 40]
Fragment all atoms: [10, 7, 31, 32, 9, 11, 37, 8, 33, 34, 13, 39, 17, 12, 38, 16, 15, 36, 41, 14, 35, 40]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| DLG | 1R7T 1R7U 4C2S 1WT2 |
| 6KW | 5L4V |
| JZR | 3K22 2A06 1PP9 5Y7X 1PPJ 1YQ3 5TL9 5BQG 3PEQ 4YK5 1YQ4 |
| J5B | 2XGI |
| E5G | 3VMP |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.