(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: DKW
File name: alatis_output_compound.sdf
|
Formula: C13H14N6O4 Compound mass: 318.28749999999997 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.48
List of identified carbohydrate fragments:
-
C5H6N2O4
Fragment probability: 1.00
Fragment mass: 144.1052
Fragment main chain atoms: [7, 8, 13, 23, 9]
Fragment all atoms: [7, 29, 20, 36, 8, 30, 21, 37, 13, 32, 19, 23, 9, 31, 12, 22, 15]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| DKW | 6FJZ |
| NEC | 1U2O 6GDG 1YSZ 5G53 6B99 1QY5 2YDV 6D28 |
| PA7 | 6B9A 2GQP 6D1X 1U0Y |
| N5O | 6CYI 6CYG 2HG1 |
| N5A | 6CYH 2HCH |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.