(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: DAF
File name: alatis_output_compound.sdf
|
Formula: C13H17N1O8 Compound mass: 315.2753000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.50
List of identified carbohydrate fragments:
-
C6H9N1O4
Fragment probability: 1.00
Fragment mass: 160.14750000000006
Fragment main chain atoms: [22, 13, 12, 10, 7, 4, 21, 33, 39, 20, 32, 38, 30, 18, 36]
Fragment all atoms: [22, 13, 12, 10, 7, 28, 14, 4, 1, 23, 24, 21, 33, 39, 20, 32, 38, 30, 18, 36]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| DAF | 1G94 1RP9 1G9H 1PPI 2GJP 1RPK 1BG9 |
| AF1 | 1BG9 |
| AC1 | 1B2Y 6SAU 1OSE 1W9X 6SAO 1HX0 |
| IAB | 1XCX |
| QPS | 6GNF 6GNG 2X2I 2QPU 1DED 4BQF 2XFF |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.