• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: CDS
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.50
• Compound probability: 0.36

List of identified carbohydrate fragments:

• C₅H₃N₂O₂
  Fragment probability: 0.29
  Fragment mass: 151.1226
  Fragment main chain atoms: [5, 11, 22, 16, 15]
  Fragment all atoms: [5, 42, 26, 11, 47, 17, 48, 24, 22, 16, 27, 15]
  

• C₄H₃N₂O₂
  Fragment probability: 0.35
  Fragment mass: 123.1125
  Fragment main chain atoms: [5, 11, 22, 16]
  Fragment all atoms: [5, 42, 26, 11, 47, 17, 48, 24, 22, 16, 27]
  

• C₂H₃N₁O₁
  Fragment probability: 0.50
  Fragment mass: 97.072
  Fragment main chain atoms: [2, 30, 25, 15]
  Fragment all atoms: [2, 37, 38, 39, 30, 25, 15]
  

• C₂N₁O₁
  Fragment probability: 0.20
  Fragment mass: 66.0382
  Fragment main chain atoms: [15, 16]
  Fragment all atoms: [15, 16, 27, 22]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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