Logo Cheminformatics Tool for Probabilistic Identification of Carbohydrates
(CTPIC)
v 1.1 (Spring 2020)

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Process a structure file

Publication files:

Submission ID: CAB
File name: alatis_output_compound.sdf

Formula: C5H9N1O5
Compound mass: 163.12830000000005
Compound with ALATIS labels (download):

Download outputs in JSON format here.


Probabilities of the best carbohydrate fragment:

  • Fragment probability: 0.88
  • Compound probability: 1.00


List of identified carbohydrate fragments:

  • C5H7N1O5
    Fragment probability: 0.88
    Fragment mass: 163.12830000000002
    Fragment main chain atoms: [2, 5, 1, 3, 4]
    Fragment all atoms: [2, 14, 7, 5, 10, 11, 19, 20, 1, 12, 13, 3, 15, 6, 4, 9, 8, 18]



Most similar ligands:

Ligand Expo IDPDB protein complex ID
CAB1DJO
3GL2MC0
2ZJP
LED2IUW
4QKD
ILG1I7Q
1XY5
1XY4
GHG1RU9
1RUL
1RUA

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Citation:

  • Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

  • The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
  • The NetwrokX library is used in the CTPIC source codes.
  • The Open Babel software package is used in the CTPIC source codes.

Contact:

For any question or concern please contact Hesam Dashti (hdashti@bwh.harvard.edu).