(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: BRD
File name: alatis_output_compound.sdf
|
Formula: C10H14N2O5 Compound mass: 242.22800000000012 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.59
List of identified carbohydrate fragments:
-
C5H9N1O4
Fragment probability: 1.00
Fragment mass: 147.12890000000002
Fragment main chain atoms: [8, 7, 6, 17, 9]
Fragment all atoms: [8, 26, 15, 31, 7, 25, 14, 30, 6, 24, 5, 22, 23, 13, 29, 17, 9, 27, 12]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| BRD | 1MQ0 |
| DHZ | 1CTT |
| ZEB | 1CTU |
| B8Q | 6OLI 6EK0 6MTD 6MTE 6MTB 6OLF 6OM0 6OLE 6MTC 6OM7 |
| E3C | 6OLE 6EK0 6OM0 6OLI 6MTC 6MTE 6OLF 6OM7 6MTB |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.