Cheminformatics Tool for Probabilistic Identification of Carbohydrates
(CTPIC)
v 1.1 (Spring 2020)

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Process a structure file

Publication files:

Formula: C₉H₁₈O₉S₁Se₁
Compound mass: 381.2581000000002
Compound with ALATIS labels (download):

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

List of identified carbohydrate fragments:

C₅H₁₀O₃
Fragment probability: 1.00
Fragment mass: 211.11720000000003
Fragment main chain atoms: [4, 6, 9, 8, 20]
Fragment all atoms: [4, 27, 28, 6, 30, 13, 37, 9, 33, 14, 38, 8, 32, 2, 23, 24, 11, 35, 20]
C₄H₈O₃
Fragment probability: 0.88
Fragment mass: 87.0969
Fragment main chain atoms: [1, 7, 5]
Fragment all atoms: [1, 21, 22, 10, 34, 7, 31, 18, 5, 29, 3, 25, 26, 12, 36]
C₂H₄O₂
Fragment probability: 1.00
Fragment mass: 74.0783
Fragment main chain atoms: [1, 7]
Fragment all atoms: [1, 21, 22, 10, 34, 7, 31, 18]

Most similar ligands:

Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
The NetwrokX library is used in the CTPIC source codes.
The Open Babel software package is used in the CTPIC source codes.

For any question or concern please contact Hesam Dashti (hdashti@bwh.harvard.edu).