Logo Cheminformatics Tool for Probabilistic Identification of Carbohydrates
(CTPIC)
v 1.1 (Spring 2020)

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Process a structure file

Publication files:

Submission ID: BA2
File name: alatis_output_compound.sdf

Formula: C26H42N10O5S1
Compound mass: 606.738999999998
Compound with ALATIS labels (download):

Download outputs in JSON format here.


Probabilities of the best carbohydrate fragment:

  • Fragment probability: 1.00
  • Compound probability: 0.24


List of identified carbohydrate fragments:

  • C5H8N2O3
    Fragment probability: 1.00
    Fragment mass: 145.13620000000003
    Fragment main chain atoms: [41, 24, 21, 20, 15]
    Fragment all atoms: [41, 24, 75, 36, 21, 74, 39, 84, 20, 73, 38, 83, 15, 70, 11, 64, 65, 28]



Most similar ligands:

Ligand Expo IDPDB protein complex ID
BA22JG3
BS55I2F
3RUX
44Q4XU2
BT52DKG
2DXU
2DZ9
3RKW
2DTI
2DVE
1WQW
2DEQ
4OP0
2DJZ
3V8L
3RIR
BTX4DQ2
4WF2
2E41
2EWN

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Citation:

  • Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

  • The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
  • The NetwrokX library is used in the CTPIC source codes.
  • The Open Babel software package is used in the CTPIC source codes.

Contact:

For any question or concern please contact Hesam Dashti (hdashti@bwh.harvard.edu).