(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: AYE
File name: alatis_output_compound.sdf
|
Formula: C3H7N1 Compound mass: 57.0941 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.36
- Compound probability: 1.00
List of identified carbohydrate fragments:
-
C3H5N1
Fragment probability: 0.36
Fragment mass: 57.0941
Fragment main chain atoms: [1, 2]
Fragment all atoms: [1, 5, 6, 2, 7, 3, 8, 9, 4]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| AYE | 4UEL 5E6J 6HEI 5JP1 6FGE 6FFA 4UF6 5JZE 5JP3 5TL7 6H7P 5CHV 6H4H 6EI1 6BI8 2ZYP 6HEK 5JQS 5OHN 3ZNH 5W8U 5OHK 6GZS 5TL6 5W8T 5LRX 6FDK 5L8W |
| IRS | |
| 1HC | 4IZV 4IZU |
| NEH | 3PHX 3O65 1YY2 3IHP 4EV2 6PGV 4FJV 3PHW 3POJ 5LRW 2IBI 3I3T |
| AKK | 1JD2 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.