(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: AKZ
File name: alatis_output_compound.sdf
|
Formula: C4H9N1O4 Compound mass: 135.11820000000003 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.88
- Compound probability: 1.00
List of identified carbohydrate fragments:
-
C4H7N1O4
Fragment probability: 0.88
Fragment mass: 135.1182
Fragment main chain atoms: [3, 1, 2, 4]
Fragment all atoms: [3, 7, 6, 16, 1, 10, 11, 2, 12, 5, 4, 13, 8, 9, 17, 18]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| AKZ | 4JR0 4JR1 2DKO |
| ASJ | 3EDR 4YA9 4Y78 2H5I 4ZVR 4ZVT 2QL9 4ZVU 4Y69 2H5J 4ZVS 4HQR 1PAU 3RJM 2QLF 4Y8U 4Y6A 2QLB 2H65 4DCP 3H1P 3P4U 4DCO 4ZVO 4DCJ 2QLJ 1IAU 3GJS 2QL7 1QTN |
| B3S | 1J8N 2OXJ 2OXK 5VTK |
| UN2 | 1H0G |
| 0A0 | 1ART |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.