Logo Cheminformatics Tool for Probabilistic Identification of Carbohydrates
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v 1.1 (Spring 2020)

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Process a structure file

Publication files:

Submission ID: ACQ
File name: alatis_output_compound.sdf

Formula: C11H19N5O15P4
Compound mass: 585.1874999999987
Compound with ALATIS labels (download):

Download outputs in JSON format here.


Probabilities of the best carbohydrate fragment:

  • Fragment probability: 1.00
  • Compound probability: 0.29


List of identified carbohydrate fragments:

  • C5H8N1O4
    Fragment probability: 1.00
    Fragment mass: 146.121
    Fragment main chain atoms: [7, 8, 11, 29, 5]
    Fragment all atoms: [7, 43, 17, 48, 8, 44, 18, 49, 11, 45, 16, 29, 5, 42, 1, 36, 37, 28]



Most similar ligands:

Ligand Expo IDPDB protein complex ID
ACQ1JBW
ABG2Q0B
2PZP
3HXY
2PZR
2PVY
3R8F
2PWL
2PZ5
2HCB
3HXX
2PY3
2Z7Q
2PVF
3CLY
ACP5IUN
1WTC
6NNG
4J97
4J95
2PZP
4C5N
5M8G
3ZM7
5NG0
5IUM
4E07
6FKL
5X40
2J4J
4MNE
4C5M
3FBR
1KF0
5JVD
6CI7
1KOF
5EG3
5XAF
4KFU
6KNZ
2R7K
2PVY
1ZYU
4C3P
4J99
4TUY
5IUL
3R8F
5AUP
5XHC
5FNV
1K3A
3B8C
5AR3
4NH1
4ZDK
5CA0
6I2P
4XZ3
4O2B
3LLA
3W34
3C9T
2PZ5
3NL5
4MO5
5C3Z
4ANB
5LA6
5M7E
6AGG
4CDS
6EG5
5IUJ
5EPV
5C41
3GIG
5IYZ
3FGO
6FJF
2PKN
5JQG
3GQI
6HEF
4AN2
4LJ6
3A1E
1TZ6
4AYT
6EQ9
2AFK
1I44
5XLZ
6GJ4
2HCB
1DAG
4MO4
6FKJ
5MF4
4AMF
5NFZ
5YLJ
2PZR
1KJI
5C8Y
2PWL
5YL2
4F1O
4O4H
3W8R
5UI0
4OAV
6GF3
6JCJ
6A8B
1E22
6QTN
5YL4
2Q0B
2PUN
5J2U
4C3R
1GLL
3AF2
2VOR
5XLT
4AN9
4WZB
1LIJ
1GQY
6QQN
1I6I
4LJ9
4J96
5F2R
2ZSE
5O7A
5KSD
6U2G
4S35
6O5M
1JBV
5ZXH
5EZY
1I5A
1SAZ
4X9L
5LYJ
1G3R
4WZA
3GIE
4XC0
3N8G
5CA1
3AR2
4IAC
3EHF
2DQS
6BS2
2OHF
5IUK
4RVZ
4XOU
5XAG
5V60
5G15
5OV7
1GQT
1LII
2AB8
5C93
5NG1
1IA0
5BMV
3JVV
4AYX
5H7O
2ABS
3HXX
2PUL
2HS4
4I55
3ZXT
5LI9
5X8C
4I50
1RFT
4RH3
5XI5
4O4I
4ZI7
2C8K
4MV4
2BY4
5C40
6C83
5OOW
4UTD
6K7I
4XF7
5ZTF
3NL6
6BR1
6HX8
4F1M
6BRF
2YL4
6O61
1O6Y
3TLM
2PY3
5XI7
6FII
5LOV
2A9Z
6HXB
6JJU
5XP3
6K7J
3EHJ
4UEU
4CVL
2XE8
4UU1
5YLS
4TV8
6K9V
4XLV
5LXT
5AUO
3B9R
4BEW
6EQO
5X1S
6I5C
4WBN
5UGX
1U54
5UHN
5YZ3
4XIV
2ZJA
1VFP
6FJR
4O4J
6D88
4UXX
1I58
4LJA
6F7C
4CK0
4F0F
4E09
4MV3
1DAH
5M7G
2X14
4I4T
5Z4U
3C9S
4K33
3T10
4MV8
1Z2P
2PVF
5OSK
4ITL
6AGK
5LXS
4U98
4MWD
6CPF
6N47
3A1C
1T5S
4TV9
5NJH
6FJM
5H74
3CLY
4ZHQ
2Z09
5M8D
4H1W
5JH7
6BRY
5JCB
4A9X
4ZOL
3HXY
2Z7Q
4J98
2DWP
2C88
2HRY
5Z4P
5CB4
6YZ5LLB
ATF1BWF
2VR1
1DVR

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Citation:

  • Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

  • The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
  • The NetwrokX library is used in the CTPIC source codes.
  • The Open Babel software package is used in the CTPIC source codes.

Contact:

For any question or concern please contact Hesam Dashti (hdashti@bwh.harvard.edu).