(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: AC6
File name: alatis_output_compound.sdf
|
Formula: C8H8O2 Compound mass: 136.14760000000004 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.62
- Compound probability: 0.30
List of identified carbohydrate fragments:
-
C2H3O1
Fragment probability: 0.62
Fragment mass: 39.0558
Fragment main chain atoms: [1, 6]
Fragment all atoms: [1, 11, 12, 13, 6, 9]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| AC6 | 2GQ8 5CQ8 5PHN 2O48 5PB8 |
| DBE | 2VKU |
| YTP | 3OOG |
| 83X | 5XEY |
| HBA | 5E4M 3ATZ 1EB9 5K1K 5V4P 4JIP 1Z42 2VQ5 3ZOE 1K03 3HGJ 5DY3 1OYB 4RNV 2GQ9 4TMC 3ZOC 4JQN |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.