(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: AA6
File name: alatis_output_compound.sdf
|
Formula: C11H16N2O5 Compound mass: 256.2545000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.50
- Compound probability: 0.44
List of identified carbohydrate fragments:
-
C5H7N1O2
Fragment probability: 0.50
Fragment mass: 102.1115
Fragment main chain atoms: [11, 8, 12, 1]
Fragment all atoms: [11, 17, 18, 34, 8, 28, 2, 22, 23, 6, 12, 1, 19, 20, 21]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| AA6 | |
| Y6M | 4CUU |
| 0EA | 3UT5 |
| MHU | 2Z2P 4TOO 4PEB 4U1V 4TP9 4U1U 4TPB 4TPF 4U26 1YJW 1SM1 4U27 4TPD 4TOM 4PEC |
| YNM | 2WS6 1TPS 2WS1 4GVU |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.