(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: A3R
File name: alatis_output_compound.sdf
|
Formula: C15H24N6O11P2 Compound mass: 526.331299999999 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.53
List of identified carbohydrate fragments:
-
C5H8N1O4
Fragment probability: 1.00
Fragment mass: 146.121
Fragment main chain atoms: [11, 12, 15, 31, 9]
Fragment all atoms: [11, 48, 23, 55, 12, 49, 24, 56, 15, 50, 21, 31, 9, 47, 4, 41, 42, 30]
-
C4H7N1O3
Fragment probability: 0.72
Fragment mass: 261.0634
Fragment main chain atoms: [3, 29, 33, 32, 34, 30, 4]
Fragment all atoms: [3, 39, 40, 7, 45, 1, 35, 36, 17, 29, 33, 32, 34, 30, 4, 41, 42]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| A3R | 6HH5 6G2A 6HH6 |
| A1R | 2QQF 2OD9 2QQG 3SII 6HH3 4B1J 4NA4 3UEL 2OD7 4J5R |
| 2RW | 4O9M |
| A2D | 2I2D |
| A22 | 4DY6 2I2E |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.