(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 9TS
File name: alatis_output_compound.sdf
|
Formula: C5H8O2 Compound mass: 100.11550000000004 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.60
- Compound probability: 1.00
List of identified carbohydrate fragments:
-
C5H8O2
Fragment probability: 0.60
Fragment mass: 85.0811
Fragment main chain atoms: [5, 4, 3]
Fragment all atoms: [5, 7, 6, 15, 4, 14, 3, 13, 2, 11, 12, 1, 8, 9, 10]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 9TS | 5VZ2 |
| BEO | 6HJI 1LFO |
| MB8 | 4OIP 4OIQ 4MQ9 4OIR 4OIN |
| 39Y | 4U0G |
| FMR | 4APB 1UXH 1UXI 2E6D 3TQ0 3P4P 1UXG 2VD6 2PTQ 2CGO 3R11 2BS2 3VRB 3SN0 2EEO 1QLB |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.