(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 9RR
File name: alatis_output_compound.sdf
|
Formula: C27H32N8O2 Compound mass: 500.59410000000014 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.83
- Compound probability: 0.14
List of identified carbohydrate fragments:
-
C3H6O2
Fragment probability: 0.83
Fragment mass: 74.0783
Fragment main chain atoms: [14, 5, 15]
Fragment all atoms: [14, 58, 59, 36, 5, 48, 49, 15, 60, 61, 37]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 9RR | 6A2P 6A2O |
| 9QR | 6A2M 6A2N 6A7E |
| CP7 | 2BLB 2BLC |
| 9QO | 6A2L 6A7C 6A2K |
| CP6 | 3QGT 6AOG 6NNI 3QFX 3LMY 4KM0 3UM5 3QG2 1J3J 2BL9 2BLA |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.