(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 9F2
File name: alatis_output_compound.sdf
|
Formula: C18H18N8O7S3 Compound mass: 554.579199999999 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.50
- Compound probability: 0.19
List of identified carbohydrate fragments:
-
C2H3N1O1
Fragment probability: 0.50
Fragment mass: 97.072
Fragment main chain atoms: [2, 33, 24, 8]
Fragment all atoms: [2, 40, 41, 42, 33, 24, 8]
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C2N1O1
Fragment probability: 0.20
Fragment mass: 66.0382
Fragment main chain atoms: [8, 11]
Fragment all atoms: [8, 11, 27, 21]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 9F2 | 6B6F 6B68 6B6C 6B69 6B5Y 6B6A 6P54 5NZW 5NZX 6B6D 6B6E |
| NZV | 6P54 |
| 9WT | 5OJ0 |
| CE3 | 3HLW 5NZY 4KOT 6C79 4PM9 4PM7 4PM5 |
| C04 | 4KOU |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.