(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 8N2
File name: alatis_output_compound.sdf
|
Formula: C11H12O4 Compound mass: 208.21010000000012 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.58
- Compound probability: 0.33
List of identified carbohydrate fragments:
-
C3H3O2
Fragment probability: 0.58
Fragment mass: 83.06530000000001
Fragment main chain atoms: [10, 7, 6]
Fragment all atoms: [10, 12, 13, 27, 7, 26, 6, 25]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 8N2 | 5N52 |
| FER | 1JT2 5X14 4RGU 4PME 1GW2 6MBY 3NX2 6G21 7ATJ 5CXX 1UWC 2BJH 6HOV 1KYZ 2WTN 1GKL 3PFC 1GWT 4JB0 6ATJ 2BNJ 6HOQ 3CBG 6HOP |
| 4FE | 3CBG |
| SXX | 1WB4 4Q8B |
| ZYC | 3QM1 3PFB |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.