(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 8MV
File name: alatis_output_compound.sdf
|
Formula: C8H8O4 Compound mass: 168.14640000000006 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.60
- Compound probability: 0.67
List of identified carbohydrate fragments:
-
C5H6O3
Fragment probability: 0.60
Fragment mass: 85.0811
Fragment main chain atoms: [5, 11, 6]
Fragment all atoms: [5, 19, 20, 8, 3, 17, 12, 11, 6, 1, 13, 14, 15, 10]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 8MV | 5URC |
| FUX | 1QXE 5URC |
| 2K1 | 4NEJ |
| 7FN | 5TEN 5TEJ |
| FOA | 2GAH 4RM3 5YYF 2GAG 5WIC 2GF3 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.