• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: 7OD
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.93
• Compound probability: 0.73

List of identified carbohydrate fragments:

• C₅H₇O₂
  Fragment probability: 0.55
  Fragment mass: 85.08110000000002
  Fragment main chain atoms: [8, 6, 2]
  Fragment all atoms: [8, 11, 10, 25, 6, 4, 20, 5, 21, 22, 2, 15, 16, 17]
  

• C₆H₈O₂
  Fragment probability: 0.50
  Fragment mass: 99.10760000000002
  Fragment main chain atoms: [8, 6, 4]
  Fragment all atoms: [8, 11, 10, 25, 6, 2, 15, 16, 17, 4, 20, 5, 21, 22, 7, 23]
  

• C₂H₁O₂
  Fragment probability: 0.93
  Fragment mass: 85.08110000000002
  Fragment main chain atoms: [8, 6]
  Fragment all atoms: [8, 11, 10, 25, 6]
  

• C₄H₄
  Fragment probability: 0.25
  Fragment mass: 99.10759999999999
  Fragment main chain atoms: [4, 6]
  Fragment all atoms: [4, 20, 5, 21, 22, 7, 23, 6]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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