(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 767
File name: alatis_output_compound.sdf
|
Formula: C17H27N5O2 Compound mass: 333.42750000000007 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.20
- Compound probability: 0.12
List of identified carbohydrate fragments:
-
C2H6N1
Fragment probability: 0.20
Fragment mass: 84.09960000000001
Fragment main chain atoms: [3, 22, 4]
Fragment all atoms: [3, 31, 32, 33, 22, 4, 34, 35, 36]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 767 | 5LBQ |
| 9HJ | 5VSD 5VSC |
| 9HG | 5VSE 5VSF |
| 7KZ | 5TTF 5TTG |
| 90P | 5V9J 5V9I |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.