(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 741
File name: alatis_output_compound.sdf
|
Formula: C27Cl1H29N6O3S1 Compound mass: 553.0743999999984 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.59
- Compound probability: 0.21
List of identified carbohydrate fragments:
-
C5H11N1O2
Fragment probability: 0.59
Fragment mass: 146.187
Fragment main chain atoms: [11, 10, 33, 8, 4, 12]
Fragment all atoms: [11, 58, 59, 35, 67, 10, 56, 57, 33, 8, 53, 54, 4, 48, 49, 12, 60, 61, 37]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 741 | 3F5P |
| XZN | 5VCZ 5VC4 4BC6 |
| D88 | 3ZZ2 |
| DB8 | 6FDY 4MXY 5VC3 5I9X 3UE4 5AJQ 5VCY 4MXX 4MXZ 4OTW 4MXO 3SOA 4QMN 6OP9 3ZZ2 |
| HKI | 3W2Q 2JIV |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.