Logo Cheminformatics Tool for Probabilistic Identification of Carbohydrates
(CTPIC)
v 1.1 (Spring 2020)

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Process a structure file

Publication files:

Submission ID: 71I
File name: alatis_output_compound.sdf

Formula: C11H20N2O4S1
Compound mass: 276.35170000000016
Compound with ALATIS labels (download):

Download outputs in JSON format here.


Probabilities of the best carbohydrate fragment:

  • Fragment probability: 1.00
  • Compound probability: 0.61


List of identified carbohydrate fragments:

  • C6H10N1O4
    Fragment probability: 1.00
    Fragment mass: 160.14750000000004
    Fragment main chain atoms: [10, 17, 6, 8, 9, 7, 15, 32, 37, 16, 33, 38]
    Fragment all atoms: [10, 34, 17, 6, 30, 5, 28, 29, 14, 36, 8, 9, 7, 31, 13, 15, 32, 37, 16, 33, 38]



Most similar ligands:

Ligand Expo IDPDB protein complex ID
71I5FL0
NHT5M7S
5MI6
2VVN
5NEL
5UN9
DV15FL1
OQ16PM9
2J45FKY

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Citation:

  • Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

  • The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
  • The NetwrokX library is used in the CTPIC source codes.
  • The Open Babel software package is used in the CTPIC source codes.

Contact:

For any question or concern please contact Hesam Dashti (hdashti@bwh.harvard.edu).