• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: 6JZ
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.88
• Compound probability: 1.00

List of identified carbohydrate fragments:

• C₄H₉O₂
  Fragment probability: 0.69
  Fragment mass: 89.11269999999999
  Fragment main chain atoms: [3, 13, 5]
  Fragment all atoms: [3, 24, 25, 1, 18, 19, 20, 13, 5, 28, 29, 7, 32, 33, 15]
  

• C₁₀H₂₁O₅
  Fragment probability: 0.72
  Fragment mass: 221.26990000000004
  Fragment main chain atoms: [3, 13, 5, 7, 15, 9, 11, 17, 12, 10, 16, 8, 6]
  Fragment all atoms: [3, 24, 25, 1, 18, 19, 20, 13, 5, 28, 29, 7, 32, 33, 15, 9, 36, 37, 11, 40, 41, 17, 12, 42, 43, 10, 38, 39, 16, 8, 34, 35, 6, 30, 31, 14]
  

• C₆H₁₃O₃
  Fragment probability: 0.71
  Fragment mass: 133.1651
  Fragment main chain atoms: [3, 13, 5, 7, 15, 9]
  Fragment all atoms: [3, 24, 25, 1, 18, 19, 20, 13, 5, 28, 29, 7, 32, 33, 15, 9, 36, 37, 11, 40, 41, 17]
  

• C₈H₁₇O₄
  Fragment probability: 0.72
  Fragment mass: 177.2175
  Fragment main chain atoms: [3, 13, 5, 7, 15, 9, 11, 17, 12, 10]
  Fragment all atoms: [3, 24, 25, 1, 18, 19, 20, 13, 5, 28, 29, 7, 32, 33, 15, 9, 36, 37, 11, 40, 41, 17, 12, 42, 43, 10, 38, 39, 16]
  

• C₁₀H₂₁O₅
  Fragment probability: 0.72
  Fragment mass: 221.26990000000004
  Fragment main chain atoms: [4, 14, 6, 8, 16, 10, 12, 17, 11, 9, 15, 7, 5]
  Fragment all atoms: [4, 26, 27, 2, 21, 22, 23, 14, 6, 30, 31, 8, 34, 35, 16, 10, 38, 39, 12, 42, 43, 17, 11, 40, 41, 9, 36, 37, 15, 7, 32, 33, 5, 28, 29, 13]
  

• C₄H₉O₂
  Fragment probability: 0.69
  Fragment mass: 89.11269999999999
  Fragment main chain atoms: [4, 14, 6]
  Fragment all atoms: [4, 26, 27, 2, 21, 22, 23, 14, 6, 30, 31, 8, 34, 35, 16]
  

• C₈H₁₇O₄
  Fragment probability: 0.72
  Fragment mass: 177.2175
  Fragment main chain atoms: [4, 14, 6, 8, 16, 10, 12, 17, 11, 9]
  Fragment all atoms: [4, 26, 27, 2, 21, 22, 23, 14, 6, 30, 31, 8, 34, 35, 16, 10, 38, 39, 12, 42, 43, 17, 11, 40, 41, 9, 36, 37, 15]
  

• C₆H₁₃O₃
  Fragment probability: 0.71
  Fragment mass: 133.1651
  Fragment main chain atoms: [4, 14, 6, 8, 16, 10]
  Fragment all atoms: [4, 26, 27, 2, 21, 22, 23, 14, 6, 30, 31, 8, 34, 35, 16, 10, 38, 39, 12, 42, 43, 17]
  

• C₈H₁₆O₅
  Fragment probability: 0.81
  Fragment mass: 192.20900000000003
  Fragment main chain atoms: [5, 7, 15, 9, 11, 17, 12, 10, 16, 8, 6]
  Fragment all atoms: [5, 28, 29, 13, 7, 32, 33, 15, 9, 36, 37, 11, 40, 41, 17, 12, 42, 43, 10, 38, 39, 16, 8, 34, 35, 6, 30, 31, 14]
  

• C₄H₈O₃
  Fragment probability: 0.88
  Fragment mass: 104.10419999999999
  Fragment main chain atoms: [5, 7, 15, 9]
  Fragment all atoms: [5, 28, 29, 13, 7, 32, 33, 15, 9, 36, 37, 11, 40, 41, 17]
  

• C₆H₁₂O₄
  Fragment probability: 0.83
  Fragment mass: 148.1566
  Fragment main chain atoms: [5, 7, 15, 9, 11, 17, 12, 10]
  Fragment all atoms: [5, 28, 29, 13, 7, 32, 33, 15, 9, 36, 37, 11, 40, 41, 17, 12, 42, 43, 10, 38, 39, 16]
  

• C₆H₁₂O₄
  Fragment probability: 0.83
  Fragment mass: 148.1566
  Fragment main chain atoms: [6, 8, 16, 10, 12, 17, 11, 9]
  Fragment all atoms: [6, 30, 31, 14, 8, 34, 35, 16, 10, 38, 39, 12, 42, 43, 17, 11, 40, 41, 9, 36, 37, 15]
  

• C₄H₈O₃
  Fragment probability: 0.88
  Fragment mass: 104.10419999999999
  Fragment main chain atoms: [6, 8, 16, 10]
  Fragment all atoms: [6, 30, 31, 14, 8, 34, 35, 16, 10, 38, 39, 12, 42, 43, 17]
  

• C₄H₈O₃
  Fragment probability: 0.88
  Fragment mass: 104.10419999999999
  Fragment main chain atoms: [9, 11, 17, 12, 10]
  Fragment all atoms: [9, 36, 37, 15, 11, 40, 41, 17, 12, 42, 43, 10, 38, 39, 16]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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