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v 1.1 (Spring 2020)

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Process a structure file

Publication files:

Submission ID: 6IA
File name: alatis_output_compound.sdf

Formula: C15H24N5O7P1
Compound mass: 417.35319999999996
Compound with ALATIS labels (download):

Download outputs in JSON format here.


Probabilities of the best carbohydrate fragment:

  • Fragment probability: 1.00
  • Compound probability: 0.36


List of identified carbohydrate fragments:

  • C5H8N1O4
    Fragment probability: 1.00
    Fragment mass: 146.121
    Fragment main chain atoms: [12, 11, 9, 27, 15]
    Fragment all atoms: [12, 46, 22, 50, 11, 45, 21, 49, 9, 44, 5, 39, 40, 26, 27, 15, 47, 20]



Most similar ligands:

Ligand Expo IDPDB protein complex ID
6IA2LBR
5LZD
5LZB
5LZE
2LBQ
4KXM
3EPL
5LZC
5LZF
2DLC
5IQR
6C64FYI
4KXL
6MZ6Q8U
4RCM
6HRM
4V79
2MTV
5WF0
3J37
4V70
5J91
4V71
4V6S
6RT4
2JSG
4V6N
4V6Q
2MVS
3IZT
5MDY
6OF1
4V6R
3J14
5IT8
5LR4
3J4W
3J5H
5LZF
4R3I
6CAE
2JRG
3J12
3J0W
4V6L
4V6Z
4U8T
3J4V
5NP6
6OSK
4YBB
5J88
5LZA
3IZU
5J5B
6OT3
6RT6
6RT5
2UUB
3J53
4V6V
6ND6
5MDZ
5LR5
4V78
5WDT
5LZD
6MTD
4V73
6EK0
5J7L
3J9Y
5WE6
5LZB
4V77
6OSQ
6Q9A
4V6P
6Q8V
5WFS
5JU8
3J57
6MTB
4V76
6O97
6RT7
5WE4
4X66
5KCR
4RCJ
4V74
6OST
4V7A
6QZP
4V6Y
3J5B
5MDW
5AFI
5J8A
5WFK
5IQR
5LZC
2UUA
6C4I
6IJN
6Q98
4V75
6OLF
3J0T
3J4Z
5MDV
3J5F
6ORL
6MTE
2UU9
3J11
3J4Y
3J55
6U48
6OM7
5JC9
6ORE
4V72
5L3P
3J5D
6N1D
4X65
5JTE
5LZE
5LQT
6Q97
6OUO
6I7V
6MTC
5IBB
6OLE
3J59
4V6K
2UUC
3J0Y
5KCS
4V6O
3J5J
6OLI
6OM0
MA65WNT
5J3C
6AAU
1WTT
5W4K
5MDV
6UO1
6QZP
5IT8
4X65
6ND6
6EK0
5J8A
4LF9
5WNR
6ND5
4DV5
5FDV
6C4I
4DR4
6O97
6BOH
6NDK
6AZ1
5J5B
3IZW
5DFE
4JI4
5WFS
4Y4O
5JC9
4V6N
4JI5
6OLE
5KCS
5WDT
5J30
5J7L
5WNQ
6CAR
5NO2
4Z3R
4JI6
5J4D
4V6O
4V6Q
5U4I
5ME1
5LZE
6QNQ
5WNV
5LZB
4KVB
4V4J
6OT3
6FKR
6CAQ
6CAE
4NXN
6CAO
5J88
5LZA
6CFJ
5LZF
5WNP
6CFL
5DOX
3J10
5LZC
5J91
5WNS
4JI2
3J13
2OW8
4DV2
5FDU
5WNU
4LFC
4JI7
5U4J
4JI1
5IQR
5WIS
5WF0
6CFK
6OM0
5NO3
6QNR
4V6K
6FYX
5LZD
2QNH
6OST
6MTB
5MDW
6OUO
4YBB
4DV4
6OSQ
3J0X
4V6L
6MTE
6CAP
4V6V
4DV6
5J4C
4LFA
4V6R
5DOY
4DR2
4X66
4ZER
6OLI
4V4I
5MDZ
4X64
5J4B
4DV7
4DUZ
6ORL
5ME0
5MDY
6B4V
6Q9A
4DR6
5WIT
6HRM
4DUY
6N9F
5AFI
6OF1
4Y4P
4NXM
6I7V
4LFB
6CAS
6FYY
3J5L
4JI0
5L3P
5WE6
5WE4
6BOK
1WTS
4Z3Q
3IZV
4DR3
5V8I
4DR5
4V6S
5NO4
4V6P
6CZR
4JI8
3J36
4DR7
5F8K
6ORE
4JI3
5CZP
4DR1
6MTC
6OSK
3J9Y
5WFK
3J0Z
4DV0
5VP2
6OM7
3J0U
4X62
6N9E
4Z3S
5UQ8
6Q98
4DV1
6Q97
4DV3
3J0V
5BR8
6OLF
5NP6
5UQ7
2BU1U6C
1U6O

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Citation:

  • Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

  • The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
  • The NetwrokX library is used in the CTPIC source codes.
  • The Open Babel software package is used in the CTPIC source codes.

Contact:

For any question or concern please contact Hesam Dashti (hdashti@bwh.harvard.edu).