(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 6FN
File name: alatis_output_compound.sdf
|
Formula: C12F1H15N5O12P3 Compound mass: 533.192999999999 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.33
List of identified carbohydrate fragments:
-
C7H8N1O3
Fragment probability: 1.00
Fragment mass: 141.12439999999998
Fragment main chain atoms: [6, 3, 7, 28, 12]
Fragment all atoms: [6, 40, 19, 44, 3, 35, 36, 7, 41, 18, 28, 12, 2, 4, 1, 34, 37, 38, 27]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 6FN | 5J2M |
| 6FM | 5J2Q 5J2P 5J2N |
| JSQ | 6R5E |
| HFD | 6DWK 6R4U |
| AVV | 3I9J |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.