• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: 6CM
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.61
• Compound probability: 0.36

List of identified carbohydrate fragments:

• C₆H₉N₁O₁
  Fragment probability: 0.42
  Fragment mass: 84.0963
  Fragment main chain atoms: [19, 23, 27]
  Fragment all atoms: [19, 66, 18, 65, 16, 61, 62, 23, 72, 22, 71, 21, 69, 70, 25, 27, 75]
  

• C₇H₁₂N₁O₂
  Fragment probability: 0.53
  Fragment mass: 129.15660000000003
  Fragment main chain atoms: [21, 22, 23, 19, 18]
  Fragment all atoms: [21, 69, 70, 26, 74, 22, 71, 25, 23, 72, 27, 75, 19, 66, 18, 65, 16, 61, 62, 15, 59, 60]
  

• C₄H₇N₁O₂
  Fragment probability: 0.61
  Fragment mass: 115.13010000000001
  Fragment main chain atoms: [21, 22, 23, 19]
  Fragment all atoms: [21, 69, 70, 26, 74, 22, 71, 25, 23, 72, 27, 75, 19, 66]
  

• C₆H₉O₁
  Fragment probability: 0.46
  Fragment mass: 70.0896
  Fragment main chain atoms: [18, 19]
  Fragment all atoms: [18, 65, 16, 61, 62, 15, 59, 60, 19, 66, 23, 72, 22, 71, 27, 75]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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