(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 5HT
File name: alatis_output_compound.sdf
|
Formula: C10H16N2O6 Compound mass: 260.2432000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.50
List of identified carbohydrate fragments:
-
C5H9N1O3
Fragment probability: 1.00
Fragment mass: 131.1295
Fragment main chain atoms: [2, 5, 6, 18, 7]
Fragment all atoms: [2, 22, 23, 5, 28, 14, 33, 6, 29, 3, 24, 25, 13, 32, 18, 7, 30, 12]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 5HT | 1EHL |
| THU | 1UWZ 1JTK 1UX1 1UX0 |
| TYU | 2FR5 |
| MUM | 5ZQ8 5ZQ1 5ZQ0 5ZTH |
| 64T | 3EI1 3CVX 6FN0 1KEG 3CVU 1CFL 4GLE 3VW3 3CVW 6IDG 1QKG 3CVV |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.