(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 4YB
File name: alatis_output_compound.sdf
|
Formula: C21H22N6O10S1 Compound mass: 550.4976999999988 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.26
List of identified carbohydrate fragments:
-
C5H8N1O4
Fragment probability: 1.00
Fragment mass: 146.121
Fragment main chain atoms: [16, 17, 20, 37, 13]
Fragment all atoms: [16, 52, 30, 58, 17, 53, 31, 59, 20, 54, 27, 37, 13, 51, 7, 47, 48, 36]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 4YB | 5C5H |
| 8PZ | 5N82 |
| YSA | 1VBN 6I5Y 2ALY 2PID 1VBM 5USF |
| DSZ | 3R9E 3TLB 5USD 4MI1 |
| LSS | 5OMW 5ONH 5ON2 5AH5 5ON3 3ZIU 6Q89 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.