(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 4D4
File name: alatis_output_compound.sdf
|
Formula: C6H14N4O3 Compound mass: 190.1998000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.50
- Compound probability: 0.85
List of identified carbohydrate fragments:
-
C6H8N2O3
Fragment probability: 0.50
Fragment mass: 190.19980000000004
Fragment main chain atoms: [5, 4, 3, 1, 2, 10, 6]
Fragment all atoms: [5, 13, 12, 27, 4, 19, 7, 3, 18, 11, 26, 1, 14, 15, 2, 16, 17, 10, 6]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| ZZU | 4NE0 2WBP 6ALN 6ALP 4M26 2WBQ |
| 4D4 | 6U48 5J5B 5IT8 5J8A 5J91 5J7L 4YBB 5JC9 5J88 |
| 2OR | 4M2G |
| C6D | 6AZK |
| ARG_LEO2_DHH22 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.