• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: 44E
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.98
• Compound probability: 0.58

List of identified carbohydrate fragments:

• C₃H₅O₃
  Fragment probability: 0.98
  Fragment mass: 89.06979999999999
  Fragment main chain atoms: [11, 13, 12]
  Fragment all atoms: [11, 47, 48, 21, 13, 51, 23, 12, 49, 50, 22]
  

• C₄H₆O₂
  Fragment probability: 0.62
  Fragment mass: 85.08109999999999
  Fragment main chain atoms: [11, 21, 14]
  Fragment all atoms: [11, 47, 48, 21, 14, 9, 43, 44, 7, 39, 40, 16]
  

• C₆H₉O₄
  Fragment probability: 0.71
  Fragment mass: 115.10699999999999
  Fragment main chain atoms: [11, 13, 23, 15]
  Fragment all atoms: [11, 47, 48, 21, 13, 51, 12, 49, 50, 22, 23, 15, 10, 45, 46, 8, 41, 42, 17]
  

• C₆H₉O₄
  Fragment probability: 0.71
  Fragment mass: 115.10699999999999
  Fragment main chain atoms: [12, 13, 11, 21, 14]
  Fragment all atoms: [12, 49, 50, 22, 13, 51, 23, 11, 47, 48, 21, 14, 9, 43, 44, 7, 39, 40, 16]
  

• C₉H₁₃O₅
  Fragment probability: 0.64
  Fragment mass: 141.1442
  Fragment main chain atoms: [14, 21, 11, 13, 23, 15]
  Fragment all atoms: [14, 9, 43, 44, 7, 39, 40, 16, 21, 11, 47, 48, 13, 51, 12, 49, 50, 22, 23, 15, 10, 45, 46, 8, 41, 42, 17]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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