(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 3X4
File name: alatis_output_compound.sdf
|
Formula: C20H26N4O6 Compound mass: 418.44259999999997 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.40
- Compound probability: 0.23
List of identified carbohydrate fragments:
-
C4H6N2O1
Fragment probability: 0.40
Fragment mass: 70.0896
Fragment main chain atoms: [1, 20, 2]
Fragment all atoms: [1, 31, 32, 33, 20, 19, 30, 22, 23, 2, 34, 35, 36]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 3X4 | 4X3V |
| 6EL | 5YJ1 |
| EF2 | 5YJ0 6R0U 5YIZ 4TZC 4V2Y 5AMI 6R1C 4CI1 5AMJ 6R1W 4V32 6R18 6R12 6R19 5AMK 5OH1 5AMH 6R13 6R1A 6R0S |
| JNW | 6R0Q |
| G13 | 3F7I |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.