Logo Cheminformatics Tool for Probabilistic Identification of Carbohydrates
(CTPIC)
v 1.1 (Spring 2020)

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Process a structure file

Publication files:

Submission ID: 3O1
File name: alatis_output_compound.sdf

Formula: C15H24N2O5S1
Compound mass: 344.42550000000006
Compound with ALATIS labels (download):

Download outputs in JSON format here.


Probabilities of the best carbohydrate fragment:

  • Fragment probability: 0.56
  • Compound probability: 0.22


List of identified carbohydrate fragments:

  • C4H9O1
    Fragment probability: 0.56
    Fragment mass: 57.113899999999994
    Fragment main chain atoms: [1, 15, 2]
    Fragment all atoms: [1, 24, 25, 26, 15, 3, 30, 31, 32, 22, 2, 27, 28, 29]



Most similar ligands:

Ligand Expo IDPDB protein complex ID
3O14RFC
3O54RFD
6H05L3O
6HZX
5L6T
5L9E
5L70
5L6K
5LVS
6Q9T
3W64RUY
6I2F
FF56GXB

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Citation:

  • Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

  • The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
  • The NetwrokX library is used in the CTPIC source codes.
  • The Open Babel software package is used in the CTPIC source codes.

Contact:

For any question or concern please contact Hesam Dashti (hdashti@bwh.harvard.edu).