(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 3K0
File name: alatis_output_compound.sdf
|
Formula: C5H10N2O6S1 Compound mass: 226.20730000000006 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.68
- Compound probability: 0.71
List of identified carbohydrate fragments:
-
C5H7N1O4
Fragment probability: 0.68
Fragment mass: 146.121
Fragment main chain atoms: [4, 2, 1, 3, 5]
Fragment all atoms: [4, 8, 9, 23, 2, 17, 18, 1, 15, 16, 3, 19, 7, 5, 10, 11, 24]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 3K0 | 4W9Y 6SN6 5MYH 6Q4L |
| LU0 | 6F75 6GO2 |
| 7B0 | 5LYD 6T9Y |
| 1L1 | |
| 0X9 | 6F79 4Z65 6F6Q 4GM5 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.