• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: 3GD
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 1.00
• Compound probability: 0.48

List of identified carbohydrate fragments:

• C₆H₁₁O₆
  Fragment probability: 1.00
  Fragment mass: 179.14750000000006
  Fragment main chain atoms: [48, 46, 45, 42, 64, 52, 61, 152, 164, 59, 150, 162, 149, 58, 161]
  Fragment all atoms: [48, 46, 45, 42, 147, 37, 139, 140, 54, 158, 64, 52, 156, 66, 61, 152, 164, 59, 150, 162, 149, 58, 161]
  

• C₆H₁₀O₆
  Fragment probability: 1.00
  Fragment mass: 178.13960000000006
  Fragment main chain atoms: [49, 47, 50, 43, 65, 51, 62, 153, 165, 60, 151, 163]
  Fragment all atoms: [49, 47, 50, 154, 66, 43, 148, 38, 141, 142, 55, 159, 65, 51, 155, 63, 62, 153, 165, 60, 151, 163]
  

• C₆H₉N₁O₁
  Fragment probability: 0.42
  Fragment mass: 84.0963
  Fragment main chain atoms: [35, 41, 56]
  Fragment all atoms: [35, 136, 33, 133, 31, 129, 130, 41, 146, 40, 145, 39, 143, 144, 53, 56, 160]
  

• C₇H₁₁N₁O₂
  Fragment probability: 0.50
  Fragment mass: 128.14870000000002
  Fragment main chain atoms: [39, 40, 41, 35, 33]
  Fragment all atoms: [39, 143, 144, 63, 40, 145, 53, 41, 146, 56, 160, 35, 136, 33, 133, 31, 129, 130, 29, 125, 126]
  

• C₄H₆N₁O₂
  Fragment probability: 0.56
  Fragment mass: 114.12220000000002
  Fragment main chain atoms: [39, 40, 41, 35]
  Fragment all atoms: [39, 143, 144, 63, 40, 145, 53, 41, 146, 56, 160, 35, 136]
  

• C₆H₉O₁
  Fragment probability: 0.46
  Fragment mass: 70.0896
  Fragment main chain atoms: [33, 35]
  Fragment all atoms: [33, 133, 31, 129, 130, 29, 125, 126, 35, 136, 41, 146, 40, 145, 56, 160]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

Disclaimer:

• The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
• The NetwrokX library is used in the CTPIC source codes.
• The Open Babel software package is used in the CTPIC source codes.

Contact: