(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 3DY
File name: alatis_output_compound.sdf
|
Formula: C6H10O5 Compound mass: 162.14020000000005 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.91
List of identified carbohydrate fragments:
-
C6H9O4
Fragment probability: 1.00
Fragment mass: 132.11430000000001
Fragment main chain atoms: [2, 3, 5, 10, 1]
Fragment all atoms: [2, 14, 11, 3, 15, 7, 19, 5, 17, 4, 16, 6, 18, 8, 20, 10, 1, 12, 13]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| AAL | 4BQ5 1URX 5TA5 4ATF 5TA9 2CDO 2CDP 4AW7 4BQ4 1AGA 5TA0 |
| 9RN | 6PTK 6PSM 6B0K 6PT9 6B0J 5OCQ |
| 3DY | 4U6D |
| GU9 | 2B5T 1TB6 |
| 8PK | 5MWK 5MUI 5MUJ |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.