(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 3DJ
File name: alatis_output_compound.sdf
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Formula: C10H12N2O4 Compound mass: 224.2128000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.56
- Compound probability: 0.50
List of identified carbohydrate fragments:
-
C4H4N1O3
Fragment probability: 0.56
Fragment mass: 112.1064
Fragment main chain atoms: [10, 6, 4, 8]
Fragment all atoms: [10, 16, 15, 28, 6, 22, 11, 4, 20, 21, 8, 14]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 3DJ | 4U1Q |
| KYN | 1T5M 1T5N 2R2N 5NAK 3PD6 3E2Z 1XT7 4BZ4 5Y7A 5Y66 3AV7 6BXP 5Y77 2VOX 2VOV 6FOX |
| KY1 | 2CH2 |
| 3EE | 3WX9 |
| NFK | 6GPV 5TI9 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.