(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 3DH
File name: alatis_output_compound.sdf
|
Formula: C12H17N5O3S1 Compound mass: 311.3594000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.43
List of identified carbohydrate fragments:
-
C5H8N1O3
Fragment probability: 1.00
Fragment mass: 130.12160000000003
Fragment main chain atoms: [20, 12, 9, 8, 6]
Fragment all atoms: [20, 12, 34, 17, 9, 33, 19, 38, 8, 32, 18, 37, 6, 31, 3, 27, 28]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 3DH | 3DHY |
| A7D | 3IOE |
| S4M | 4YUW 2PT6 6O65 5Y4Q 4YUX 4YV0 4YV1 4YUZ 4YUY 4YV2 2O0L 4BP3 2PT9 5B1S 5Y4P 4YUV |
| DSH | 5IS7 6BQ3 3RW9 |
| NEA | 2IH4 2IBT 2IH2 2NP6 1G38 2IH5 2IBS 2NP7 |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.