(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 3B9
File name: alatis_output_compound.sdf
|
Formula: C24H24N6O2 Compound mass: 428.4854000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.38
- Compound probability: 0.19
List of identified carbohydrate fragments:
-
C2H3
Fragment probability: 0.38
Fragment mass: 82.12339999999999
Fragment main chain atoms: [2, 24]
Fragment all atoms: [2, 36, 37, 38, 24]
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C3H2N1O1
Fragment probability: 0.29
Fragment mass: 121.1594
Fragment main chain atoms: [22, 27, 14, 24]
Fragment all atoms: [22, 31, 27, 14, 50, 51, 24]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 3B9 | 3BA9 3BAC |
| AT6 | 3E68 |
| 4M1 | 4ZAE |
| 83A | 5J9F 5IZQ |
| 3BA | 3BAA |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.