(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 2YR
File name: alatis_output_compound.sdf
|
Formula: C11H18N3O7P1S1 Compound mass: 367.3146000000001 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 1.00
- Compound probability: 0.39
List of identified carbohydrate fragments:
-
C5H8N1O3
Fragment probability: 1.00
Fragment mass: 130.1216
Fragment main chain atoms: [5, 7, 8, 21, 10]
Fragment all atoms: [5, 30, 31, 7, 34, 15, 38, 8, 35, 6, 32, 33, 20, 21, 10, 36, 14]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 2YR | 3O1R 4NII 3O1O 3O1P 3BU0 3O1U 3O1M 3O1V 3BTZ 4NID 3BTX 3BIE 3O1S 3H8O 4NIG 3O1T 3BI3 4MGT 3BKZ 3H8X 4NIH 4MG2 3H8R |
| D00 | 1N4B |
| C34 | 133D 6GCF 2OKS |
| XCY | 1YFH |
| N4S | 2MCJ |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.