(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 2QD
File name: alatis_output_compound.sdf
|
Formula: C9H16N2O5 Compound mass: 232.23310000000015 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.60
- Compound probability: 0.75
List of identified carbohydrate fragments:
-
C7H10N1O4
Fragment probability: 0.60
Fragment mass: 160.1475
Fragment main chain atoms: [8, 5, 4, 6, 9]
Fragment all atoms: [8, 14, 13, 31, 5, 26, 2, 20, 21, 3, 22, 23, 4, 24, 25, 6, 27, 10, 9, 16, 15, 32]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 2QD | 4NWD |
| 3ZA | 4IGR 4IGT |
| MEQ | 6C5L 3GN5 6I7V 5J30 5J7L 6C4H 1NV8 4ACQ 5J5B 6C4I 5U4I 4U59 5J88 5CZP 4YBB 5MDV 5IT8 5JC9 5J91 3FMY 5J8A 5KCR 6U48 |
| 40F | 4XAQ 4XAR |
| QMM | 2H6M 2H9H |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.