• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: 2L4
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.98
• Compound probability: 0.45

List of identified carbohydrate fragments:

• C₅H₁₁N₁O₄
  Fragment probability: 0.77
  Fragment mass: 133.14530000000002
  Fragment main chain atoms: [4, 6, 8, 5]
  Fragment all atoms: [4, 27, 28, 17, 35, 6, 30, 19, 37, 8, 31, 20, 38, 5, 29, 3, 25, 26, 13, 18, 36]
  

• C₃H₇O₃
  Fragment probability: 0.98
  Fragment mass: 104.10420000000002
  Fragment main chain atoms: [4, 6, 8]
  Fragment all atoms: [4, 27, 28, 17, 35, 6, 30, 19, 37, 8, 31, 20, 38]
  

• C₅H₁₀N₁O₃
  Fragment probability: 0.73
  Fragment mass: 85.1042
  Fragment main chain atoms: [5, 8]
  Fragment all atoms: [5, 29, 3, 25, 26, 13, 18, 36, 8, 31, 6, 30, 4, 27, 28, 19, 37, 20, 38]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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