• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: 2DE
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.62
• Compound probability: 0.65

List of identified carbohydrate fragments:

• C₅H₈O₁
  Fragment probability: 0.50
  Fragment mass: 70.0896
  Fragment main chain atoms: [12, 7, 5]
  Fragment all atoms: [12, 45, 46, 20, 7, 38, 5, 35, 4, 33, 34, 6, 36, 37]
  

• C₂H₃O₁
  Fragment probability: 0.62
  Fragment mass: 56.0631
  Fragment main chain atoms: [12, 7]
  Fragment all atoms: [12, 45, 46, 20, 7, 38]
  

• C₂H₃
  Fragment probability: 0.38
  Fragment mass: 55.098099999999995
  Fragment main chain atoms: [1, 13]
  Fragment all atoms: [1, 24, 25, 26, 13]
  

• C₂H₃
  Fragment probability: 0.38
  Fragment mass: 55.098099999999995
  Fragment main chain atoms: [2, 13]
  Fragment all atoms: [2, 27, 28, 29, 13]
  

• C₂H₃
  Fragment probability: 0.38
  Fragment mass: 54.090199999999996
  Fragment main chain atoms: [3, 14]
  Fragment all atoms: [3, 30, 31, 32, 14]
  

• C₄H₅
  Fragment probability: 0.31
  Fragment mass: 69.1246
  Fragment main chain atoms: [9, 13]
  Fragment all atoms: [9, 41, 8, 39, 40, 11, 43, 44, 13]
  

• C₄H₅
  Fragment probability: 0.31
  Fragment mass: 68.1167
  Fragment main chain atoms: [10, 14]
  Fragment all atoms: [10, 42, 6, 36, 37, 4, 33, 34, 14]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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