• Example saccharides
• Example non-saccharides
• RCSB Ligand Expo entries
• Saccharide entries in Ligand Expo
• Saccharide fingerprints

Submission ID: 2CF
File name: alatis_output_compound.sdf

Download outputs in JSON format here.

Probabilities of the best carbohydrate fragment:

• Fragment probability: 0.50
• Compound probability: 0.64

List of identified carbohydrate fragments:

• C₂H₂O₁
  Fragment probability: 0.50
  Fragment mass: 54.0473
  Fragment main chain atoms: [11, 15]
  Fragment all atoms: [11, 48, 49, 22, 15]
  

• C₂H₃
  Fragment probability: 0.38
  Fragment mass: 55.098099999999995
  Fragment main chain atoms: [1, 12]
  Fragment all atoms: [1, 26, 27, 28, 12]
  

• C₂H₃
  Fragment probability: 0.38
  Fragment mass: 55.098099999999995
  Fragment main chain atoms: [2, 12]
  Fragment all atoms: [2, 29, 30, 31, 12]
  

• C₂H₃
  Fragment probability: 0.38
  Fragment mass: 54.090199999999996
  Fragment main chain atoms: [3, 13]
  Fragment all atoms: [3, 32, 33, 34, 13]
  

• C₂H₃
  Fragment probability: 0.38
  Fragment mass: 53.0823
  Fragment main chain atoms: [4, 14]
  Fragment all atoms: [4, 35, 36, 37, 14]
  

• C₄H₅
  Fragment probability: 0.31
  Fragment mass: 69.1246
  Fragment main chain atoms: [7, 12]
  Fragment all atoms: [7, 42, 5, 38, 39, 8, 43, 44, 12]
  

• C₄H₅
  Fragment probability: 0.31
  Fragment mass: 68.1167
  Fragment main chain atoms: [9, 13]
  Fragment all atoms: [9, 45, 6, 40, 41, 10, 46, 47, 13]
  

Most similar ligands:

Citation:

• Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y

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