(CTPIC)
v 1.1 (Spring 2020)
Process a structure file
Publication files:
Submission ID: 229
File name: alatis_output_compound.sdf
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Formula: C11H16N4O4 Compound mass: 268.26850000000013 Compound with ALATIS labels (download): |
Download outputs in JSON format here.
Probabilities of the best carbohydrate fragment:
- Fragment probability: 0.72
- Compound probability: 0.42
List of identified carbohydrate fragments:
-
C4H9N1O3
Fragment probability: 0.72
Fragment mass: 120.1267
Fragment main chain atoms: [3, 7, 8, 4]
Fragment all atoms: [3, 23, 24, 16, 33, 7, 28, 12, 8, 29, 18, 35, 4, 25, 26, 17, 34]
Most similar ligands:
| Ligand Expo ID | PDB protein complex ID |
| 229 | 3K8O |
| DIH | 3OCC 3OF3 2P4S 2A0Y 1N3I 1RSZ 3BGS 2A0W 2A0X |
| JMQ | 3EPW |
| 22A | 3K8Q |
| IM5 | 5UGF 4EAR 4EB8 3PHB 6AQS 5ETJ 3PHC |
Citation:
- Hesam Dashti, William M. Westler, Jonathan R. Wedell, Olga V. Demler, Hamid R. Eghbalnia, John L. Markley & Samia Mora, Probabilistic identification of saccharide moieties in biomolecules and their protein complexes, Scientific Data volume 7, Article number: 210 (2020), https://doi.org/10.1038/s41597-020-0547-y, https://www.nature.com/articles/s41597-020-0547-y
Disclaimer:
- The custom source code, developed using Python3 in the Linux environment. This work is copyrighted under the terms of GPL, and the results are released under CC0 1.0 Universal of the Open Science Framework. The web-service and the source codes are provided on an “as is” basis without warranty of any kind, either expressed or implied. Any usage of the web-server, or modification and application of the source codes are free for academic use when CTPIC publications are cited.
- The NetwrokX library is used in the CTPIC source codes.
- The Open Babel software package is used in the CTPIC source codes.